libpappsomspp
Library for mass spectrometry
grpmappeptidetogroup.h
Go to the documentation of this file.
1
/**
2
* \file pappsomspp/grouping/grpmappeptidegroup.h
3
* \date 15/12/2017
4
* \author Olivier Langella
5
* \brief keep trace of peptide to group assignment
6
*/
7
8
/*******************************************************************************
9
* Copyright (c) 2017 Olivier Langella <Olivier.Langella@u-psud.fr>.
10
*
11
* This file is part of the PAPPSOms++ library.
12
*
13
* PAPPSOms++ is free software: you can redistribute it and/or modify
14
* it under the terms of the GNU General Public License as published by
15
* the Free Software Foundation, either version 3 of the License, or
16
* (at your option) any later version.
17
*
18
* PAPPSOms++ is distributed in the hope that it will be useful,
19
* but WITHOUT ANY WARRANTY; without even the implied warranty of
20
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21
* GNU General Public License for more details.
22
*
23
* You should have received a copy of the GNU General Public License
24
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25
*
26
* Contributors:
27
* Olivier Langella <Olivier.Langella@u-psud.fr> - initial API and
28
*implementation
29
******************************************************************************/
30
31
#ifndef GRPMAPPEPTIDETOGROUP_H
32
#define GRPMAPPEPTIDETOGROUP_H
33
34
#include <map>
35
36
#include "
grppeptideset.h
"
37
#include "
grpgroup.h
"
38
39
namespace
pappso
40
{
41
42
class
GrpMapPeptideToGroup
43
{
44
private
:
45
std::map<GrpPeptide *, GrpGroupSp>
m_mapPeptideToGroup
;
46
47
public
:
48
GrpMapPeptideToGroup
();
49
GrpMapPeptideToGroup
(
const
GrpMapPeptideToGroup
&other);
50
~GrpMapPeptideToGroup
();
51
52
/** @brief get all groups concerned by a list of peptides
53
*/
54
void
getGroupList
(
const
GrpPeptideSet
&peptide_set_in,
55
std::list<GrpGroupSp> &impacted_group_list)
const
;
56
57
/** @brief set peptide keys pointing on the group
58
*/
59
void
set
(
const
GrpPeptideSet
&peptide_set_in,
GrpGroupSp
grp_group);
60
61
void
clear
(std::list<GrpGroupSp> &grp_group_list);
62
};
63
}
// namespace pappso
64
#endif // GRPMAPPEPTIDETOGROUP_H
grpgroup.h
pappso::GrpMapPeptideToGroup::~GrpMapPeptideToGroup
~GrpMapPeptideToGroup()
Definition:
grpmappeptidetogroup.cpp:45
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition:
aa.cpp:39
pappso::GrpMapPeptideToGroup
Definition:
grpmappeptidetogroup.h:43
pappso::GrpPeptideSet
Definition:
grppeptideset.h:36
pappso::GrpMapPeptideToGroup::set
void set(const GrpPeptideSet &peptide_set_in, GrpGroupSp grp_group)
set peptide keys pointing on the group
Definition:
grpmappeptidetogroup.cpp:74
pappso::GrpMapPeptideToGroup::m_mapPeptideToGroup
std::map< GrpPeptide *, GrpGroupSp > m_mapPeptideToGroup
Definition:
grpmappeptidetogroup.h:45
pappso::GrpMapPeptideToGroup::getGroupList
void getGroupList(const GrpPeptideSet &peptide_set_in, std::list< GrpGroupSp > &impacted_group_list) const
get all groups concerned by a list of peptides
Definition:
grpmappeptidetogroup.cpp:50
grppeptideset.h
pappso::GrpMapPeptideToGroup::clear
void clear(std::list< GrpGroupSp > &grp_group_list)
Definition:
grpmappeptidetogroup.cpp:94
pappso::GrpMapPeptideToGroup::GrpMapPeptideToGroup
GrpMapPeptideToGroup()
Definition:
grpmappeptidetogroup.cpp:36
pappso::GrpGroupSp
std::shared_ptr< GrpGroup > GrpGroupSp
Definition:
grpgroup.h:38
pappsomspp
grouping
grpmappeptidetogroup.h
Generated on Mon Dec 21 2020 17:05:07 for libpappsomspp by
1.8.20